ENSG00000004766


Homo sapiens

Features
Gene ID: ENSG00000004766
  
Biological name :VPS50
  
Synonyms : Q96JG6 / VPS50 / VPS50, EARP/GARPII complex subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: q21.2
Gene start: 93232340
Gene end: 93361121
  
Corresponding Affymetrix probe sets: 1554216_at (Human Genome U133 Plus 2.0 Array)   1554217_a_at (Human Genome U133 Plus 2.0 Array)   207045_at (Human Genome U133 Plus 2.0 Array)   226031_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000415809
Ensembl peptide - ENSP00000414450
Ensembl peptide - ENSP00000443104
Ensembl peptide - ENSP00000251739
Ensembl peptide - ENSP00000307666
Ensembl peptide - ENSP00000390584
Ensembl peptide - ENSP00000395433
Ensembl peptide - ENSP00000405553
Ensembl peptide - ENSP00000406787
NCBI entrez gene - 55610     See in Manteia.
OMIM - 616465
RefSeq - XM_011516396
RefSeq - NM_001257998
RefSeq - NM_017667
RefSeq - NM_024553
RefSeq - XM_011516395
RefSeq Peptide - NP_078829
RefSeq Peptide - NP_001244927
RefSeq Peptide - NP_060137
swissprot - H0Y7Q2
swissprot - H7BZP1
swissprot - F2Z3F0
swissprot - F8WDT1
swissprot - Q96JG6
swissprot - C9JA29
Ensembl - ENSG00000004766
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps50ENSDARG00000096912Danio rerio
 vps50ENSDARG00000002880Danio rerio
 VPS50ENSGALG00000009500Gallus gallus
 Vps50ENSMUSG00000001376Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019514  Protein of unknown function DUF2451, C-terminal
 IPR019515  Vacuolar protein sorting-associated protein 54, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0032456 endocytic recycling IMP
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0055037 recycling endosome IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:1990745 EARP complex IDA
 molecular_functionGO:0000149 SNARE binding IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr