ENSG00000102241


Homo sapiens

Features
Gene ID: ENSG00000102241
  
Biological name :HTATSF1
  
Synonyms : HIV-1 Tat specific factor 1 / HTATSF1 / O43719
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q26.3
Gene start: 136497079
Gene end: 136512346
  
Corresponding Affymetrix probe sets: 202601_s_at (Human Genome U133 Plus 2.0 Array)   202602_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000218364
Ensembl peptide - ENSP00000411381
Ensembl peptide - ENSP00000412420
Ensembl peptide - ENSP00000442699
NCBI entrez gene - 27336     See in Manteia.
OMIM - 300346
RefSeq - XM_005262404
RefSeq - NM_001163280
RefSeq - NM_014500
RefSeq Peptide - NP_055315
RefSeq Peptide - NP_001156752
swissprot - O43719
swissprot - Q5H918
swissprot - Q5H919
Ensembl - ENSG00000102241
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 htatsf1ENSDARG00000056649Danio rerio
 HTATSF1ENSGALG00000006410Gallus gallus
 Q8BGC0ENSMUSG00000067873Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034392  TatSF1-like, RNA recognition motif 1
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0019079 viral genome replication TAS
 biological_processGO:0032784 regulation of DNA-templated transcription, elongation TAS
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005684 U2-type spliceosomal complex IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr