ENSG00000108406


Homo sapiens

Features
Gene ID: ENSG00000108406
  
Biological name :DHX40
  
Synonyms : DEAH-box helicase 40 / DHX40 / Q8IX18
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q23.1
Gene start: 59565525
Gene end: 59608345
  
Corresponding Affymetrix probe sets: 218277_s_at (Human Genome U133 Plus 2.0 Array)   222574_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000463025
Ensembl peptide - ENSP00000462686
Ensembl peptide - ENSP00000462702
Ensembl peptide - ENSP00000251241
Ensembl peptide - ENSP00000388749
Ensembl peptide - ENSP00000437958
Ensembl peptide - ENSP00000462246
NCBI entrez gene - 79665     See in Manteia.
OMIM - 607570
RefSeq - XM_017025083
RefSeq - NM_001166301
RefSeq - NM_024612
RefSeq - XM_006722083
RefSeq - XM_011525253
RefSeq - XM_011525254
RefSeq - XM_017025080
RefSeq - XM_017025081
RefSeq - XM_017025082
RefSeq Peptide - NP_001159773
RefSeq Peptide - NP_078888
swissprot - J3KSX9
swissprot - J3KTK0
swissprot - J3KS08
swissprot - F5H625
swissprot - Q8IX18
swissprot - J3KSW6
Ensembl - ENSG00000108406
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dhx40ENSDARG00000041586Danio rerio
 DHX40ENSGALG00000005126Gallus gallus
 Dhx40ENSMUSG00000018425Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DHX8 / Q14562 / DEAH-box helicase 8ENSG0000006759639
DHX38 / Q92620 / DEAH-box helicase 38ENSG0000014082936
DHX16 / O60231 / DEAH-box helicase 16ENSG0000020456036
DHX15 / O43143 / DEAH-box helicase 15ENSG0000010960634
DHX33 / Q9H6R0 / DEAH-box helicase 33ENSG0000000510032
DHX35 / Q9H5Z1 / DEAH-box helicase 35ENSG0000010145231
DHX34 / Q14147 / DExH-box helicase 34ENSG0000013481528


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR002464  DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
 IPR007502  Helicase-associated domain
 IPR011545  DEAD/DEAH box helicase domain
 IPR011709  Domain of unknown function DUF1605
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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