ENSG00000113387


Homo sapiens

Features
Gene ID: ENSG00000113387
  
Biological name :SUB1
  
Synonyms : P53999 / SUB1 / SUB1 homolog, transcriptional regulator
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: p13.3
Gene start: 32531633
Gene end: 32604079
  
Corresponding Affymetrix probe sets: 212857_x_at (Human Genome U133 Plus 2.0 Array)   214512_s_at (Human Genome U133 Plus 2.0 Array)   221727_at (Human Genome U133 Plus 2.0 Array)   224586_x_at (Human Genome U133 Plus 2.0 Array)   224587_at (Human Genome U133 Plus 2.0 Array)   237784_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000423356
Ensembl peptide - ENSP00000427100
Ensembl peptide - ENSP00000426850
Ensembl peptide - ENSP00000423893
Ensembl peptide - ENSP00000265073
Ensembl peptide - ENSP00000422078
Ensembl peptide - ENSP00000422806
NCBI entrez gene - 10923     See in Manteia.
OMIM - 600503
RefSeq - NM_006713
RefSeq - XM_011513944
RefSeq - XM_017008986
RefSeq - XM_017008987
RefSeq Peptide - NP_006704
swissprot - P53999
swissprot - D6R970
swissprot - D6RC37
swissprot - Q6IBA2
Ensembl - ENSG00000113387
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sub1aENSDARG00000053446Danio rerio
 sub1bENSDARG00000007720Danio rerio
 ENSGALG00000034905Gallus gallus
 SUB1ENSGALG00000003248Gallus gallus
 Sub1ENSMUSG00000022205Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003173  Transcriptional coactivator p15 (PC4)
 IPR009044  ssDNA-binding transcriptional regulator


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IDA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0032508 DNA duplex unwinding IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051260 protein homooligomerization IMP
 biological_processGO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter IBA
 biological_processGO:0060395 SMAD protein signal transduction IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005667 transcription factor complex IDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0001205 transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003678 DNA helicase activity IMP
 molecular_functionGO:0003690 double-stranded DNA binding IMP
 molecular_functionGO:0003697 single-stranded DNA binding IMP
 molecular_functionGO:0003713 transcription coactivator activity IDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0033613 activating transcription factor binding IPI
 molecular_functionGO:0042802 identical protein binding IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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