ENSG00000116830


Homo sapiens

Features
Gene ID: ENSG00000116830
  
Biological name :TTF2
  
Synonyms : Q9UNY4 / transcription termination factor 2 / TTF2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p13.1
Gene start: 117060303
Gene end: 117107453
  
Corresponding Affymetrix probe sets: 1555307_at (Human Genome U133 Plus 2.0 Array)   204407_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000408111
Ensembl peptide - ENSP00000358478
NCBI entrez gene - 8458     See in Manteia.
OMIM - 604718
RefSeq - XM_017002555
RefSeq - NM_003594
RefSeq - XM_017002551
RefSeq - XM_017002552
RefSeq - XM_017002553
RefSeq - XM_017002554
RefSeq - XM_005271277
RefSeq - XM_011542303
RefSeq - XM_017002549
RefSeq - XM_017002550
RefSeq Peptide - NP_003585
swissprot - Q9UNY4
swissprot - X6RI15
swissprot - A0A024R0F1
Ensembl - ENSG00000116830
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ttf2ENSDARG00000104105Danio rerio
 TTF2ENSGALG00000015249Gallus gallus
 Ttf2ENSMUSG00000033222Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001650  Helicase, C-terminal
 IPR002464  DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
 IPR010666  Zinc finger, GRF-type
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006353 DNA-templated transcription, termination TAS
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0008023 transcription elongation factor complex TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008094 DNA-dependent ATPase activity TAS
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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