ENSG00000131876


Homo sapiens

Features
Gene ID: ENSG00000131876
  
Biological name :SNRPA1
  
Synonyms : P09661 / small nuclear ribonucleoprotein polypeptide A / SNRPA1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q26.3
Gene start: 101281510
Gene end: 101295282
  
Corresponding Affymetrix probe sets: 206055_s_at (Human Genome U133 Plus 2.0 Array)   215722_s_at (Human Genome U133 Plus 2.0 Array)   216977_x_at (Human Genome U133 Plus 2.0 Array)   242146_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000486896
Ensembl peptide - ENSP00000254193
Ensembl peptide - ENSP00000452836
Ensembl peptide - ENSP00000453309
Ensembl peptide - ENSP00000453521
NCBI entrez gene - 6627     See in Manteia.
OMIM - 603521
RefSeq - NM_003090
RefSeq Peptide - NP_003081
swissprot - H0YKK0
swissprot - H0YLR3
swissprot - H0YMA0
swissprot - P09661
Ensembl - ENSG00000131876
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpa1ENSDARG00000024651Danio rerio
 SNRPA1ENSGALG00000007170Gallus gallus
 P57784ENSMUSG00000030512Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003603  U2A"/phosphoprotein 32 family A, C-terminal
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007283 spermatogenesis IGI
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0035722 interleukin-12-mediated signaling pathway TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005681 spliceosomal complex IDA
 cellular_componentGO:0005686 U2 snRNP TAS
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex TAS
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030620 U2 snRNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr