ENSG00000135316


Homo sapiens

Features
Gene ID: ENSG00000135316
  
Biological name :SYNCRIP
  
Synonyms : O60506 / synaptotagmin binding cytoplasmic RNA interacting protein / SYNCRIP
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: q14.3
Gene start: 85607785
Gene end: 85643792
  
Corresponding Affymetrix probe sets: 1555427_s_at (Human Genome U133 Plus 2.0 Array)   209024_s_at (Human Genome U133 Plus 2.0 Array)   209025_s_at (Human Genome U133 Plus 2.0 Array)   217832_at (Human Genome U133 Plus 2.0 Array)   217833_at (Human Genome U133 Plus 2.0 Array)   217834_s_at (Human Genome U133 Plus 2.0 Array)   236146_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000484577
Ensembl peptide - ENSP00000347380
Ensembl peptide - ENSP00000358635
Ensembl peptide - ENSP00000397782
NCBI entrez gene - 10492     See in Manteia.
OMIM - 616686
RefSeq - XM_017010180
RefSeq - NM_001159677
RefSeq - NM_001253771
RefSeq - NM_006372
RefSeq - XM_005248635
RefSeq - XM_005248636
RefSeq - XM_005248637
RefSeq - XM_017010176
RefSeq - XM_017010177
RefSeq - XM_017010178
RefSeq - XM_017010179
RefSeq - NM_001159673
RefSeq - NM_001159674
RefSeq - NM_001159675
RefSeq - NM_001159676
RefSeq Peptide - NP_001153146
RefSeq Peptide - NP_001153147
RefSeq Peptide - NP_001153148
RefSeq Peptide - NP_001153149
RefSeq Peptide - NP_001240700
RefSeq Peptide - NP_006363
RefSeq Peptide - NP_001153145
swissprot - B7Z645
swissprot - F6UXX1
swissprot - O60506
Ensembl - ENSG00000135316
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 syncripENSDARG00000040184Danio rerio
 syncriplENSDARG00000026723Danio rerio
 SYNCRIPENSGALG00000015830Gallus gallus
 Q7TMK9ENSMUSG00000032423Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HNRNPR / O43390 / heterogeneous nuclear ribonucleoprotein RENSG0000012594483
RBM47 / A0AV96 / RNA binding motif protein 47ENSG0000016369433
A1CF / Q9NQ94 / APOBEC1 complementation factorENSG0000014858431
RBM46 / Q8TBY0 / RNA binding motif protein 46ENSG0000015196230
DND1 / Q8IYX4 / DND microRNA-mediated repression inhibitor 1ENSG0000025645313


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR034544  Heterogeneous nuclear ribonucleoprotein Q, RNA recognition motif 1
 IPR034548  Heterogeneous nuclear ribonucleoprotein Q, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IC
 biological_processGO:0001649 osteoblast differentiation HDA
 biological_processGO:0006396 RNA processing TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0016032 viral process IEA
 biological_processGO:0017148 negative regulation of translation IMP
 biological_processGO:0070934 CRD-mediated mRNA stabilization IMP
 biological_processGO:0071346 cellular response to interferon-gamma IDA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0070937 CRD-mediated mRNA stability complex IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 cellular_componentGO:0071204 histone pre-mRNA 3"end processing complex IEA
 cellular_componentGO:0097452 GAIT complex IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008143 poly(A) binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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