ENSG00000143977


Homo sapiens

Features
Gene ID: ENSG00000143977
  
Biological name :SNRPG
  
Synonyms : P62308 / small nuclear ribonucleoprotein polypeptide G / SNRPG
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: p13.3
Gene start: 70281362
Gene end: 70293771
  
Corresponding Affymetrix probe sets: 205644_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000416334
Ensembl peptide - ENSP00000402194
Ensembl peptide - ENSP00000441332
Ensembl peptide - ENSP00000272348
Ensembl peptide - ENSP00000391403
Ensembl peptide - ENSP00000393388
NCBI entrez gene - 6637     See in Manteia.
OMIM - 603542
RefSeq - XM_017004774
RefSeq - NM_001317165
RefSeq - NM_001317166
RefSeq - NM_001317167
RefSeq - NM_001317168
RefSeq - NM_001317169
RefSeq - NM_001317171
RefSeq - NM_003096
RefSeq Peptide - NP_001304100
RefSeq Peptide - NP_003087
RefSeq Peptide - NP_001304095
RefSeq Peptide - NP_001304096
RefSeq Peptide - NP_001304094
RefSeq Peptide - NP_001304097
RefSeq Peptide - NP_001304098
swissprot - Q49AN9
swissprot - F5H013
swissprot - P62308
swissprot - C9JVQ0
Ensembl - ENSG00000143977
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpgENSDARG00000099667Danio rerio
 SNRPGENSGALG00000028409Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR034098  Small nuclear ribonucleoprotein G


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly NAS
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008334 histone mRNA metabolic process TAS
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0051170 import into nucleus TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005683 U7 snRNP IDA
 cellular_componentGO:0005685 U1 snRNP IDA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IDA
 cellular_componentGO:0005689 U12-type spliceosomal complex IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex NAS
 cellular_componentGO:0034709 methylosome IDA
 cellular_componentGO:0034719 SMN-Sm protein complex IDA
 cellular_componentGO:0043186 P granule IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr