ENSG00000164167


Homo sapiens

Features
Gene ID: ENSG00000164167
  
Biological name :LSM6
  
Synonyms : LSM6 / LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated / P62312
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q31.22
Gene start: 146175685
Gene end: 146200000
  
Corresponding Affymetrix probe sets: 205036_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000422392
Ensembl peptide - ENSP00000427036
Ensembl peptide - ENSP00000296581
Ensembl peptide - ENSP00000420929
NCBI entrez gene - 11157     See in Manteia.
OMIM - 607286
RefSeq - NM_007080
RefSeq - XM_017007672
RefSeq - XM_017007673
RefSeq Peptide - NP_009011
swissprot - P62312
Ensembl - ENSG00000164167
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm6ENSDARG00000036995Danio rerio
 LSM6ENSGALG00000009985Gallus gallus
 Lsm6ENSMUSG00000031683Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNRPF / P62306 / small nuclear ribonucleoprotein polypeptide FENSG0000013934341


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR016487  Sm-like protein Lsm6/SmF


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0030490 maturation of SSU-rRNA IBA
 biological_processGO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay TAS
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005732 small nucleolar ribonucleoprotein complex IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex TAS
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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