ENSG00000196655


Homo sapiens

Features
Gene ID: ENSG00000196655
  
Biological name :TRAPPC4
  
Synonyms : Q9Y296 / trafficking protein particle complex 4 / TRAPPC4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: q23.3
Gene start: 119018432
Gene end: 119025454
  
Corresponding Affymetrix probe sets: 217958_at (Human Genome U133 Plus 2.0 Array)   217959_s_at (Human Genome U133 Plus 2.0 Array)   234456_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000435339
Ensembl peptide - ENSP00000436281
Ensembl peptide - ENSP00000436827
Ensembl peptide - ENSP00000433658
Ensembl peptide - ENSP00000436005
Ensembl peptide - ENSP00000351896
Ensembl peptide - ENSP00000405033
Ensembl peptide - ENSP00000432920
NCBI entrez gene - 51399     See in Manteia.
OMIM - 610971
RefSeq - NM_001318486
RefSeq - NM_001318489
RefSeq - NM_001318490
RefSeq - NM_001318492
RefSeq - NM_001318494
RefSeq - NM_016146
RefSeq - NM_001318488
RefSeq Peptide - NP_001305415
RefSeq Peptide - NP_001305418
RefSeq Peptide - NP_001305419
RefSeq Peptide - NP_001305421
RefSeq Peptide - NP_001305423
RefSeq Peptide - NP_057230
RefSeq Peptide - NP_001305417
swissprot - Q9Y296
swissprot - E9PKS9
swissprot - E9PN70
swissprot - E9PQE8
swissprot - G3V1A0
swissprot - G5EA23
swissprot - J3KP27
Ensembl - ENSG00000196655
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trappc4ENSDARG00000027418Danio rerio
 TRAPPC4ENSGALG00000007707Gallus gallus
 Q9ES56ENSMUSG00000032112Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007233  Trafficking protein particle complex subunit
 IPR011012  Longin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0016358 dendrite development ISS
 biological_processGO:0048208 COPII vesicle coating TAS
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005795 Golgi stack ISS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0008021 synaptic vesicle ISS
 cellular_componentGO:0030008 TRAPP complex IEA
 cellular_componentGO:0030425 dendrite ISS
 cellular_componentGO:0045202 synapse ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017112 Rab guanyl-nucleotide exchange factor activity IBA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
Syndecan interactions
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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