ENSG00000213782


Homo sapiens

Features
Gene ID: ENSG00000213782
  
Biological name :DDX47
  
Synonyms : DDX47 / DEAD-box helicase 47 / Q9H0S4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: p13.1
Gene start: 12813316
Gene end: 12829981
  
Corresponding Affymetrix probe sets: 220890_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000444000
Ensembl peptide - ENSP00000319578
Ensembl peptide - ENSP00000350698
NCBI entrez gene - 51202     See in Manteia.
OMIM - 615428
RefSeq - NM_201224
RefSeq - NM_016355
RefSeq Peptide - NP_057439
RefSeq Peptide - NP_957518
swissprot - Q9H0S4
swissprot - A0A024RAS3
swissprot - F5H1N9
Ensembl - ENSG00000213782
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx47ENSDARG00000102353Danio rerio
 DDX47ENSGALG00000011794Gallus gallus
 Ddx47ENSMUSG00000030204Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DDX28 / Q9NUL7 / DEAD-box helicase 28ENSG0000018281029


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0008380 RNA splicing IMP
 biological_processGO:0008625 extrinsic apoptotic signaling pathway via death domain receptors IDA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0016020 membrane HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
rRNA modification in the nucleus and cytosol
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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