Gene expression search

    This tool allows to select genes based on their expression level in human tissues.

* Define the RPKM or Z-Score cutoff corresponding to the tissue of interest. a RPKM>0 (>2 to avoid noise) and a Z score>=5 indicates that the gene is expressed in that tissue

* Use the DELTA filters (using the radio buttons and the lower panel) to find genes differentially expressed in 2 different tissues or conditions (eg. WT Vs Cancer).

* Patterns corresponding to your query are marked in blue.

Note:
RPKM= No.of Mapped reads/ length of transcript in kb/ total no.of reads in million
 
 

Normal tissues

Cancer Cell lines

  RNA-Seq Microarray

tissue   RPKM AB   Z-score CD

colon
heart
hypothalamus
kidney
liver
lung
ovary
skeletalmuscle
spleen
testes
adipose      
  Microarray

tissue   Z-score  

breast
cns
colon
kidney
non small cell lung
leukemia
melanoma
ovary
prostate
Select tissues and define corresponding RPKM / Z-Score cutoff
A Z-Score >= 5 or a RPKM > 0 indicates that the gene is likely to be expressed in the tissue.

Delta for RNA-seq (A Vs B) X
Delta for Microarray (C Vs D) X




   



 

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The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2017
contact: otassy@igbmc.fr