3065


Homo sapiens (NCBI)

Features
Gene ID: 3065
  
Biological name :
  
Synonyms : GON-10|HD1|RPD3|RPD3L1 / HDAC1 / histone deacetylase 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens (NCBI)
  
Chr. number:
Strand:
Band:
Gene start:
Gene end:
  
Corresponding Affymetrix probe sets: 201209_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: RefSeq - 13128860
RefSeq - 767903932
RefSeq - NC_000001.11
RefSeq - NG_047018.1
RefSeq - NP_004955.2
RefSeq - XP_011539611.1
RefSeq - NM_004964.2
RefSeq - XM_011541309.2
  
See co-cited genes in PubMed
Warning: Please see the Ensembl gene model ENSG00000116478 to get all the annotations available for this gene.


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II TAS
 biological_processGO:0006325 chromatin organization TAS
 biological_processGO:0006338 chromatin remodeling IC
 biological_processGO:0006346 methylation-dependent chromatin silencing IGI
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006476 protein deacetylation IDA
 biological_processGO:0007596 blood coagulation TAS
 biological_processGO:0008284 positive regulation of cell proliferation IMP
 biological_processGO:0009913 epidermal cell differentiation ISS
 biological_processGO:0010629 negative regulation of gene expression IMP
 biological_processGO:0010832 negative regulation of myotube differentiation IMP
 biological_processGO:0010870 positive regulation of receptor biosynthetic process IMP
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016575 histone deacetylation IMP
 biological_processGO:0032922 circadian regulation of gene expression ISS
 biological_processGO:0042475 odontogenesis of dentin-containing tooth ISS
 biological_processGO:0042733 embryonic digit morphogenesis ISS
 biological_processGO:0043044 ATP-dependent chromatin remodeling HDA
 biological_processGO:0043066 negative regulation of apoptotic process ISS
 biological_processGO:0043922 negative regulation by host of viral transcription IMP
 biological_processGO:0045652 regulation of megakaryocyte differentiation TAS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated ISS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0060766 negative regulation of androgen receptor signaling pathway IDA
 biological_processGO:0060789 hair follicle placode formation ISS
 biological_processGO:0061029 eyelid development in camera-type eye ISS
 biological_processGO:0061198 fungiform papilla formation ISS
 biological_processGO:0070932 histone H3 deacetylation IDA
 biological_processGO:0070933 histone H4 deacetylation IDA
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IGI
 biological_processGO:1904837 beta-catenin-TCF complex assembly TAS
 cellular_componentGO:0000118 histone deacetylase complex TAS
 cellular_componentGO:0000785 chromatin IDA
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016580 Sin3 complex IDA
 cellular_componentGO:0016581 NuRD complex IDA
 cellular_componentGO:0032991 protein-containing complex IDA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding ISS
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding HDA
 molecular_functionGO:0001046 core promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding IPI
 molecular_functionGO:0001103 RNA polymerase II repressing transcription factor binding IPI
 molecular_functionGO:0002039 p53 binding IPI
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0003714 transcription corepressor activity IDA
 molecular_functionGO:0004407 histone deacetylase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding TAS
 molecular_functionGO:0019213 deacetylase activity ISS
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0031492 nucleosomal DNA binding HDA
 molecular_functionGO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific) IEA
 molecular_functionGO:0033558 protein deacetylase activity IMP
 molecular_functionGO:0033613 activating transcription factor binding IPI
 molecular_functionGO:0042826 histone deacetylase binding IPI
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0047485 protein N-terminus binding IDA
 molecular_functionGO:0051059 NF-kappaB binding IPI
 molecular_functionGO:0070491 repressing transcription factor binding IPI


Pathways (from Reactome)
Pathway description
No match


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr