393405


Danio rerio (NCBI)
proteinkinaseassemblyautophagyactivityphagophoresitenucleusautophagosomemitochondrionmitophagymacroautophagyactivationlocalizationpiecemealmicroautophagycytoplasmcytosolextrinsiccomponentmembraneatgulkcomplexregulatorbinding

Features
Gene ID: 393405
  
Biological name :
  
Synonyms : atg13 / ATG13 autophagy related 13 homolog (S. cerevisiae) / zgc:63526
  
Possible biological names infered from orthology :
  
Species: Danio rerio (NCBI)
  
Chr. number:
Strand:
Band:
Gene start:
Gene end:
  
Corresponding Affymetrix probe sets: Dr.11542.1.A1_at (Zebrafish Array)   
  
Cross references: RefSeq - 528485392
RefSeq - XP_005169027.1
RefSeq - NC_007118.7
RefSeq - 41054988
RefSeq - NP_956727.1
RefSeq - NM_200433.2
RefSeq - XM_005168970.4
  
See co-cited genes in PubMed
Warning: Please see the Ensembl gene model ENSDARG00000036040 to get all the annotations available for this gene.


Gene Ontology (GO)
catabolic processcellular component organizationcellular component biogenesiscellular metabolic processprocess utilizing autophagic mechanismnitrogen compound metabolic processprimary metabolic processregulation of molecular functionorganic substance metabolic processmacromolecule localizationcellular localizationcatabolic processcellular component organizationcellular component biogenesiscellular metabolic processprocess utilizing autophagic mechanismnitrogen compound metabolic processprimary metabolic processregulation of molecular functionorganic substance metabolic processmacromolecule localizationcellular localizationcatabolic processcellular component organizationcellular component biogenesiscellular metabolic processprocess utilizing autophagic mechanismnitrogen compound metabolic processprimary metabolic processregulation of molecular functionorganic substance metabolic processmacromolecule localizationcellular localizationcatabolic processcellular component organizationcellular component biogenesiscellular metabolic processprocess utilizing autophagic mechanismnitrogen compound metabolic processprimary metabolic processregulation of molecular functionorganic substance metabolic processmacromolecule localizationcellular localizationcatabolic processcellular component organizationcellular component biogenesiscellular metabolic processprocess utilizing autophagic mechanismnitrogen compound metabolic processprimary metabolic processregulation of molecular functionorganic substance metabolic processmacromolecule localizationcellular localizationcatabolic processcellular component organizationcellular component biogenesiscellular metabolic processprocess utilizing autophagic mechanismnitrogen compound metabolic processprimary metabolic processregulation of molecular functionorganic substance metabolic processmacromolecule localizationcellular localizationcatabolic processcellular component organizationcellular component biogenesiscellular metabolic processprocess utilizing autophagic mechanismnitrogen compound metabolic processprimary metabolic processregulation of molecular functionorganic substance metabolic processmacromolecule localizationcellular localizationcatabolic processcellular component organizationcellular component biogenesiscellular metabolic processprocess utilizing autophagic mechanismnitrogen compound metabolic processprimary metabolic processregulation of molecular functionorganic substance metabolic processmacromolecule localizationcellular localizationcatabolic processcellular component organizationcellular component biogenesiscellular metabolic processprocess utilizing autophagic mechanismnitrogen compound metabolic processprimary metabolic processregulation of molecular functionorganic substance metabolic processmacromolecule localizationcellular localizationcatabolic processcellular component organizationcellular component biogenesiscellular metabolic processprocess utilizing autophagic mechanismnitrogen compound metabolic processprimary metabolic processregulation of molecular functionorganic substance metabolic processmacromolecule localizationcellular localizationcatabolic prcatabolic processcellular comcellular component organizationcellular comcellular component biogenesiscellular metcellular metabolic processprocess utilprocess utilizing autophagic mechanismnitrogen comnitrogen compound metabolic processprimary metaprimary metabolic processregulation oregulation of molecular functionorganic subsorganic substance metabolic processmacromoleculmacromolecule localizationcellular loccellular localization
enzyme regulator activityprotein bindingenzyme regulator activityprotein bindingenzyme regulator activityprotein bindingenzyme regulator activityprotein bindingenzyme regulator activityprotein bindingenzyme regulator activityprotein bindingenzyme regulator activityprotein bindingenzyme regulator activityprotein bindingenzyme regulator activityprotein bindingenzyme regulator activityprotein bindingenzyme regulator activityenzyme regulator activityprotein bindingprotein binding
cellmembraneprotein-containing complexcellmembraneprotein-containing complexcellmembraneprotein-containing complexcellmembraneprotein-containing complexcellmembraneprotein-containing complexcellmembraneprotein-containing complexcellmembraneprotein-containing complexcellmembraneprotein-containing complexcellmembraneprotein-containing complexcellmembraneprotein-containing complexcellcellmembranemembraneprotein-containing complexprotein-containing complex
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0000423 mitophagy IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0016236 macroautophagy IBA
 biological_processGO:0032147 activation of protein kinase activity IBA
 biological_processGO:0034497 protein localization to phagophore assembly site IBA
 biological_processGO:0034727 piecemeal microautophagy of the nucleus IBA
 biological_processGO:0044804 autophagy of nucleus IBA
 cellular_componentGO:0000407 phagophore assembly site IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IBA
 cellular_componentGO:0019898 extrinsic component of membrane IBA
 cellular_componentGO:1990316 Atg1/ULK1 kinase complex IEA
 molecular_functionGO:0019887 protein kinase regulator activity IBA
 molecular_functionGO:0019901 protein kinase binding IBA


Pathways (from Reactome)
Pathway description
No match


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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