6598


Homo sapiens (NCBI)

Features
Gene ID: 6598
  
Biological name :
  
Synonyms : BAF47|CSS3|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS / SMARCB1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens (NCBI)
  
Chr. number:
Strand:
Band:
Gene start:
Gene end:
  
Corresponding Affymetrix probe sets: 212167_s_at (Human Genome U133 Plus 2.0 Array)   228898_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: RefSeq - 1385123353
RefSeq - 27545326
RefSeq - 55956801
RefSeq - 768025629
RefSeq - 962305318
RefSeq - NC_000022.11
RefSeq - NG_009303.1
RefSeq - NP_001304875.1
RefSeq - NP_001349806.1
RefSeq - NP_003064.2
RefSeq - NT_187633.1
RefSeq - XP_011528647.1
RefSeq - NP_001007469.1
RefSeq - NM_001007468.2
RefSeq - NM_001317946.1
RefSeq - NM_001362877.1
RefSeq - NM_003073.4
RefSeq - XM_011530345.2
  
See co-cited genes in PubMed
Warning: Please see the Ensembl gene model ENSG00000099956 to get all the annotations available for this gene.


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001188 RNA polymerase I transcriptional preinitiation complex assembly IEA
 biological_processGO:0006281 DNA repair IBA
 biological_processGO:0006337 nucleosome disassembly IDA
 biological_processGO:0006338 chromatin remodeling IMP
 biological_processGO:0006357 regulation of transcription by RNA polymerase II NAS
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0008285 negative regulation of cell proliferation IBA
 biological_processGO:0015074 DNA integration TAS
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0039692 single stranded viral RNA replication via double stranded DNA intermediate IDA
 biological_processGO:0043044 ATP-dependent chromatin remodeling IBA
 biological_processGO:0043923 positive regulation by host of viral transcription IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IDA
 biological_processGO:0090240 positive regulation of histone H4 acetylation IMP
 biological_processGO:1900110 negative regulation of histone H3-K9 dimethylation IMP
 biological_processGO:1900113 negative regulation of histone H3-K9 trimethylation IMP
 biological_processGO:1901838 positive regulation of transcription of nucleolar large rRNA by RNA polymerase I IMP
 biological_processGO:1902661 positive regulation of glucose mediated signaling pathway IDA
 biological_processGO:2000617 positive regulation of histone H3-K9 acetylation IMP
 biological_processGO:2000618 regulation of histone H4-K16 acetylation IMP
 cellular_componentGO:0000790 nuclear chromatin HDA
 cellular_componentGO:0001650 fibrillar center IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0016514 SWI/SNF complex IDA
 cellular_componentGO:0032991 protein-containing complex HDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0071564 npBAF complex ISS
 cellular_componentGO:0071565 nBAF complex ISS
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding HDA
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding HDA
 molecular_functionGO:0001164 RNA polymerase I CORE element sequence-specific DNA binding IMP
 molecular_functionGO:0002039 p53 binding IPI
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003713 transcription coactivator activity NAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030957 Tat protein binding IPI
 molecular_functionGO:0031492 nucleosomal DNA binding HDA


Pathways (from Reactome)
Pathway description
No match


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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