ENSDARG00000002487


Danio rerio

Features
Gene ID: ENSDARG00000002487
  
Biological name :noc3l
  
Synonyms : noc3l / NOC3-like DNA replication regulator / Q6DRN3
  
Possible biological names infered from orthology : Nucleolar complex / Q8VI84 / Q8WTT2
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 5399680
Gene end: 5418340
  
Corresponding Affymetrix probe sets: Dr.18330.1.S1_at (Zebrafish Array)   NM_001002863_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000004350
Ensembl peptide - ENSDARP00000127021
NCBI entrez gene - 321289     See in Manteia.
RefSeq - NM_001002863
RefSeq Peptide - NP_001002863
swissprot - Q6DRN3
swissprot - R4GEV8
ZFIN ID - ZDB-GENE-030131-9878
Ensembl - ENSDARG00000002487
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOC3LENSGALG00000035667Gallus gallus
 NOC3LENSG00000173145Homo sapiens
 Noc3lENSMUSG00000024999Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005612  CCAAT-binding factor
 IPR011501  Nucleolar complex-associated protein 3, N-terminal
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR016903  Nucleolar complex-associated protein 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007517 muscle organ development IMP
 biological_processGO:0019216 regulation of lipid metabolic process IMP
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0003682 chromatin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
yolk shape , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
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 ZFA:0000114 heart heart morphology , abnormal
heart quality , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
Show

 ZFA:0000152 retina retina morphology , abnormal
retina decreased size , abnormal
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 ZFA:0000155 somite somite morphology , abnormal
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 ZFA:0000236 mandibular muscle mandibular muscle aplastic , abnormal
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 ZFA:0001094 whole organism whole organism immobile , abnormal
whole organism mobility , abnormal
whole organism decreased size , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk apoptotic , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton morphology , abnormal
mandibular arch skeleton aplastic , abnormal
Show

 ZFA:0005145 muscle muscle degenerate , abnormal
Show

 ZFA:0009091 melanocyte melanocyte spatial pattern , abnormal
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 ZFA:0009115 skeletal muscle cell skeletal muscle cell myofibril structure , abnormal
skeletal muscle cell myofibril decreased width , abnormal
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 ZFA:0009141 macrophage macrophage mislocalised , abnormal
Show

 ZFA:0009327 neutrophil neutrophil mislocalised , abnormal
neutrophil decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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