ENSDARG00000002720


Danio rerio

Features
Gene ID: ENSDARG00000002720
  
Biological name :utp15
  
Synonyms : Q7ZW33 / utp15 / utp15, U3 small nucleolar ribonucleoprotein, homolog
  
Possible biological names infered from orthology : Q8C7V3 / Q8TED0 / UTP15, small subunit processome component
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 7037349
Gene end: 7056760
  
Corresponding Affymetrix probe sets: Dr.3262.1.S1_at (Zebrafish Array)   NM_199704_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000106434
Ensembl peptide - ENSDARP00000124648
NCBI entrez gene - 325106     See in Manteia.
RefSeq - XM_005158982
RefSeq - NM_199704
RefSeq Peptide - NP_955998
swissprot - Q7ZW33
ZFIN ID - ZDB-GENE-030131-3831
Ensembl - ENSDARG00000002720
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UTP15ENSGALG00000013510Gallus gallus
 UTP15ENSG00000164338Homo sapiens
 Utp15ENSMUSG00000041747Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR018983  U3 small nucleolar RNA-associated protein 15, C-terminal
 IPR019775  WD40 repeat, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0045766 positive regulation of angiogenesis IGI
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary condensed , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
Show

 ZFA:0000128 midbrain midbrain apoptotic , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
whole organism quality , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
head flat , abnormal
Show

 ZFA:0001115 trunk trunk decreased length , abnormal
trunk decreased thickness , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel decreased length , abnormal
intersegmental vessel hypoplastic , abnormal
intersegmental vessel decreased amount , abnormal
Show

 ZFA:0001286 caudal vein plexus caudal vein plexus endothelial tip cell absent , abnormal
caudal vein plexus decreased thickness , abnormal
caudal vein plexus complexity , abnormal
caudal vein plexus endothelial tip cell decreased amount , abnormal
caudal vein plexus decreased length , abnormal
Show

 ZFA:0005025 dorsal longitudinal anastomotic vessel dorsal longitudinal anastomotic vessel aplastic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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