ENSDARG00000002916


Danio rerio

Features
Gene ID: ENSDARG00000002916
  
Biological name :sec31b
  
Synonyms : sec31b / SEC31 homolog B, COPII coat complex component
  
Possible biological names infered from orthology : Protein transport protein Sec31B / Q3TZ89 / Q9NQW1
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 48419226
Gene end: 48467781
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000127134
Ensembl peptide - ENSDARP00000127147
Ensembl peptide - ENSDARP00000008006
NCBI entrez gene - 100148383     See in Manteia.
RefSeq - XM_001921546
RefSeq - XM_005173003
RefSeq - XM_005173004
swissprot - U3JA69
swissprot - E7F114
swissprot - U3JA82
ZFIN ID - ZDB-GENE-060418-2
Ensembl - ENSDARG00000002916
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEC31BENSGALG00000005722Gallus gallus
 Q9NQW1ENSG00000075826Homo sapiens
 Q3TZ89ENSMUSG00000051984Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sec31a / SEC31 homolog A, COPII coat complex component / O94979* / Q3UPL0* / Protein transport protein Sec31A *ENSDARG0000002108249


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR024298  Ancestral coatomer element 1, Sec16/Sec31


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000123 liver liver decreased size , abnormal
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 ZFA:0000140 pancreas pancreas decreased size , abnormal
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 ZFA:0000152 retina retina apoptotic process increased process quality , abnormal
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 ZFA:0001338 intestine intestine decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr