ENSDARG00000003705


Danio rerio

Features
Gene ID: ENSDARG00000003705
  
Biological name :prnprs3
  
Synonyms : prion protein, related sequence 3 / prnprs3
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 3677650
Gene end: 3685280
  
Corresponding Affymetrix probe sets: Dr.13229.1.A1_at (Zebrafish Array)   NM_001013298_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000129661
NCBI entrez gene - 503702     See in Manteia.
RefSeq - NM_001013298
RefSeq Peptide - NP_001013316
swissprot - X1WHE9
ZFIN ID - ZDB-GENE-041221-3
Ensembl - ENSDARG00000003705
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prnpb / prion protein bENSDARG0000004404838


Protein motifs (from Interpro)
Interpro ID Name
 IPR022416  Prion/Doppel protein, beta-ribbon domain
 IPR034309  Annexin A7, chordates


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IDA
 biological_processGO:0021731 trigeminal motor nucleus development IMP
 biological_processGO:0042981 regulation of apoptotic process IMP
 biological_processGO:0048854 brain morphogenesis IMP
 biological_processGO:0048915 posterior lateral line system development IMP
 biological_processGO:0051260 protein homooligomerization IEA
 biological_processGO:2000310 regulation of NMDA receptor activity IMP
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain malformed , abnormal
Show

 ZFA:0000029 hindbrain hindbrain morphology , abnormal
hindbrain apoptotic , abnormal
Show

 ZFA:0000048 olfactory placode olfactory placode apoptotic , abnormal
Show

 ZFA:0000107 eye eye malformed , abnormal
eye apoptotic , abnormal
Show

 ZFA:0000128 midbrain midbrain morphology , abnormal
midbrain apoptotic , abnormal
Show

 ZFA:0000295 trigeminal ganglion trigeminal ganglion morphology , abnormal
trigeminal ganglion apoptotic , abnormal
Show

 ZFA:0000940 posterior lateral line neuromast posterior lateral line neuromast has fewer parts of type neuromast hair cell , abnormal
posterior lateral line neuromast mislocalised , abnormal
Show

 ZFA:0000944 posterior lateral line posterior lateral line increased diameter , abnormal
posterior lateral line axon defasciculated , abnormal
posterior lateral line decreased length , abnormal
posterior lateral line has fewer parts of type posterior lateral line neuromast , abnormal
posterior lateral line myelinating Schwann cell circular , abnormal
Show

 ZFA:0001114 head head morphology , abnormal
head peripheral neuron decreased amount , abnormal
Show

 ZFA:0001157 posterior lateral line primordium posterior lateral line primordium circular , abnormal
posterior lateral line primordium disorganized , abnormal
posterior lateral line primordium cell-cell adherens junction decreased object quality , abnormal
posterior lateral line primordium adherens junction maintenance decreased process quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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