ENSDARG00000004270


Danio rerio

Features
Gene ID: ENSDARG00000004270
  
Biological name :atl3
  
Synonyms : atl3 / atlastin 3
  
Possible biological names infered from orthology : atlastin GTPase 3 / Q6DD88 / Q91YH5
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 30773764
Gene end: 30794824
  
Corresponding Affymetrix probe sets: Dr.15371.1.A1_at (Zebrafish Array)   Dr.22296.1.A1_at (Zebrafish Array)   Dr.7189.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113308
Ensembl peptide - ENSDARP00000155131
Ensembl peptide - ENSDARP00000149203
Ensembl peptide - ENSDARP00000119766
Ensembl peptide - ENSDARP00000012931
Ensembl peptide - ENSDARP00000113120
NCBI entrez gene - 449995     See in Manteia.
swissprot - A2CEM4
swissprot - A2CEM3
swissprot - A2CEM2
swissprot - F6PA68
ZFIN ID - ZDB-GENE-041010-109
Ensembl - ENSDARG00000004270
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ATL3ENSG00000184743Homo sapiens
 Atl3ENSMUSG00000024759Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
atl1 / atlastin GTPase 1 / Q8BH66* / Q8WXF7* / Atlastin-1 *ENSDARG0000006048162
atl2 / atlastin GTPase 2 / Q6PA06* / Q8NHH9* / Mus musculus atlastin GTPase 2 (Atl2), transcript variant 5, mRNA.*ENSDARG0000005771962


Protein motifs (from Interpro)
Interpro ID Name
 IPR003191  Guanylate-binding protein/Atlastin, C-terminal
 IPR015894  Guanylate-binding protein, N-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030386  GB1/RHD3-type guanine nucleotide-binding (G) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr