ENSDARG00000004726


Danio rerio

Features
Gene ID: ENSDARG00000004726
  
Biological name :trappc11
  
Synonyms : Q1RLX4 / trafficking protein particle complex 11 / trappc11
  
Possible biological names infered from orthology : B2RXC1 / Q7Z392 / Trafficking protein particle complex subunit 11
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 7320948
Gene end: 7375049
  
Corresponding Affymetrix probe sets: Dr.2015.1.A1_at (Zebrafish Array)   NM_199626_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000054808
NCBI entrez gene - 323003     See in Manteia.
RefSeq - XM_005157122
RefSeq - NM_199626
RefSeq Peptide - NP_955920
swissprot - Q1RLX4
ZFIN ID - ZDB-GENE-030131-1723
Ensembl - ENSDARG00000004726
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRAPPC11ENSGALG00000010654Gallus gallus
 Q7Z392ENSG00000168538Homo sapiens
 B2RXC1ENSMUSG00000038102Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR021773  Foie gras liver health family 1
 IPR025876  Trafficking protein particle complex subunit 11, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001889 liver development IMP
 biological_processGO:0006487 protein N-linked glycosylation IMP
 biological_processGO:0007030 Golgi organization IMP
 biological_processGO:0009306 protein secretion IMP
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0060041 retina development in camera-type eye IMP
 cellular_componentGO:0005794 Golgi apparatus IEA


Pathways (from Reactome)
Pathway description
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000084 yolk yolk non-functional , abnormal
Show

 ZFA:0000095 pharyngeal arch 3-7 skeleton pharyngeal arch 3-7 skeleton quality , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000108 fin fin decreased size , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut immature , abnormal
Show

 ZFA:0000123 liver liver increased size , abnormal
liver fatty , abnormal
liver quality , abnormal
liver increased amount , abnormal
liver decreased amount , abnormal
liver lipid droplet increased accumulation liver , abnormal
liver decreased size , abnormal
Show

 ZFA:0000152 retina retina quality , abnormal
Show

 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism decreased life span , abnormal
whole organism increased amount , abnormal
whole organism decreased amount , abnormal
whole organism lipooligosaccharide decreased amount , abnormal
whole organism N-glycan decreased amount , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001612 pharyngeal arch 1 pharyngeal arch 1 postero-ventral region decreased size , abnormal
Show

 ZFA:0009111 hepatocyte hepatocyte increased size , abnormal
hepatocyte endoplasmic reticulum dilated , abnormal
hepatocyte lipid droplet increased amount , abnormal
hepatocyte glycogen granule decreased amount , abnormal
hepatocyte morphology , abnormal
hepatocyte endoplasmic reticulum distended , abnormal
hepatocyte Golgi apparatus broken , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr