ENSDARG00000005112


Danio rerio

Features
Gene ID: ENSDARG00000005112
  
Biological name :cdh17
  
Synonyms : cadherin 17, LI cadherin (liver-intestine) / cdh17
  
Possible biological names infered from orthology : cadherin 17 / Q12864 / Q9R100
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 26774182
Gene end: 26802798
  
Corresponding Affymetrix probe sets: Dr.3609.1.S1_at (Zebrafish Array)   NM_194422_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000042894
Ensembl peptide - ENSDARP00000154473
NCBI entrez gene - 378452     See in Manteia.
RefSeq - NM_194422
RefSeq Peptide - NP_919403
swissprot - F1RD80
ZFIN ID - ZDB-GENE-030910-3
Ensembl - ENSDARG00000005112
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDH17ENSGALG00000035094Gallus gallus
 CDH17ENSG00000079112Homo sapiens
 Cdh17ENSMUSG00000028217Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cdh16 / cadherin 16, KSP-cadherin / O75309* / O88338* / cadherin 16*ENSDARG0000007757026


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013783  Immunoglobulin-like fold
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0048793 pronephros development IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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