ENSDARG00000005479


Danio rerio

Features
Gene ID: ENSDARG00000005479
  
Biological name :tenm3
  
Synonyms : teneurin transmembrane protein 3 / tenm3
  
Possible biological names infered from orthology : Q9P273
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 39387876
Gene end: 39779913
  
Corresponding Affymetrix probe sets: Dr.21502.1.A1_at (Zebrafish Array)   Dr.8281.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113440
Ensembl peptide - ENSDARP00000152185
Ensembl peptide - ENSDARP00000124238
Ensembl peptide - ENSDARP00000079326
Ensembl peptide - ENSDARP00000109423
NCBI entrez gene - 767719     See in Manteia.
RefSeq - NM_001076657
RefSeq Peptide - NP_001070125
swissprot - A2BG74
swissprot - F8W4C5
swissprot - E7EYS1
swissprot - Q0D280
ZFIN ID - ZDB-GENE-990714-19
Ensembl - ENSDARG00000005479
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000033966Gallus gallus
 ENSGALG00000043815Gallus gallus
 TENM3ENSGALG00000030065Gallus gallus
 TENM3ENSG00000218336Homo sapiens
 Tenm3ENSMUSG00000031561Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tenm4 / teneurin transmembrane protein 4 / Q3UHK6* / Q6N022* / Teneurin-4 *ENSDARG0000010508860
TENM3 / si:dkey-237h12.3 / Q9P273* / teneurin transmembrane protein 3*ENSDARG0000008759960
si:ch211-12m10.1 / TENM2* / Q9NT68* / teneurin-2 isoform 2 * / teneurin transmembrane protein 2*ENSDARG0000001117149
si:ch211-166i24.1 / TENM2* / Q9NT68* / teneurin-2 isoform 2 * / teneurin transmembrane protein 2*ENSDARG0000009067644
tenm1 / teneurin transmembrane protein 1 / Q9UKZ4* / Q9WTS4*ENSDARG0000000340327
si:ch211-246m6.5ENSDARG0000010375018
VWDE / si:dkey-30e9.7 / Q6DFV8* / Q8N2E2* / von Willebrand factor D and EGF domains*ENSDARG0000010169714
TENM2 / si:dkey-34l15.2 / Q9NT68* / teneurin-2 isoform 2 * / teneurin transmembrane protein 2*ENSDARG000000371226
wif1 / wnt inhibitory factor 1 / Q9WUA1* / Q9Y5W5*ENSDARG000000055414
vwde / von Willebrand factor D and EGF domainsENSDARG000001034433
si:ch211-246m6.5ENSDARG000000116731


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR006530  YD repeat
 IPR008969  Carboxypeptidase-like, regulatory domain superfamily
 IPR009471  Teneurin intracellular, N-terminal
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013032  EGF-like, conserved site
 IPR022385  Rhs repeat-associated core
 IPR027689  Teneurin-2/3
 IPR028916  Tox-GHH domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0097264 self proteolysis IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000024 retinal ganglion cell layer retinal ganglion cell layer absent , abnormal
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 ZFA:0000119 retinal inner nuclear layer retinal inner nuclear layer absent , abnormal
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 ZFA:0001094 whole organism whole organism behavioral quality , abnormal
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 ZFA:0001329 retinal inner plexiform layer retinal inner plexiform layer absent , abnormal
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 ZFA:0009310 retinal ganglion cell retinal ganglion cell neuron projection mislocalised , abnormal
retinal ganglion cell neuron projection displaced to optic tectum , abnormal
retinal ganglion cell neuron projection guidance process quality , abnormal
retinal ganglion cell dendrite mislocalised , abnormal
retinal ganglion cell dendrite displaced to retinal inner plexiform layer , abnormal
retinal ganglion cell dendrite guidance process quality , abnormal
retinal ganglion cell dendrite displaced to retinal inner nuclear layer , abnormal
retinal ganglion cell dendrite displaced to retinal outer plexiform layer , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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