ENSDARG00000007425


Danio rerio

Features
Gene ID: ENSDARG00000007425
  
Biological name :apol1
  
Synonyms : apol1 / apolipoprotein L, 1
  
Possible biological names infered from orthology : APOLD1 / apolipoprotein L domain containing 1 / Q96LR9
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 37971353
Gene end: 37974725
  
Corresponding Affymetrix probe sets: Dr.5195.1.A1_at (Zebrafish Array)   NM_001030138_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000134943
NCBI entrez gene - 560340     See in Manteia.
RefSeq - NM_001030138
RefSeq Peptide - NP_001025309
swissprot - A0A0R4IKX7
ZFIN ID - ZDB-GENE-030131-3217
Ensembl - ENSDARG00000007425
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 APOLD1ENSGALG00000011784Gallus gallus
 APOLD1ENSG00000178878Homo sapiens
 Apold1ENSMUSG00000090698Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:cabz01007802.1 / APOLD1* / Q96LR9* / apolipoprotein L domain containing 1*ENSDARG0000006803041
si:rp71-1g18.13 / APOLD1* / Q96LR9* / apolipoprotein L domain containing 1*ENSDARG0000002318540
si:cabz01007807.1 / APOLD1* / Q96LR9* / apolipoprotein L domain containing 1*ENSDARG0000008996139


Protein motifs (from Interpro)
Interpro ID Name
 IPR008405  Apolipoprotein L


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003094 glomerular filtration IMP
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0032835 glomerulus development IMP
 biological_processGO:0042157 lipoprotein metabolic process IEA
 biological_processGO:0072015 glomerular visceral epithelial cell development IMP
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008289 lipid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000088 YSL YSL edematous , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0001079 blood vasculature blood vasculature blood plasma decreased amount , abnormal
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 ZFA:0001094 whole organism whole organism edematous , abnormal
whole organism decreased amount , abnormal
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 ZFA:0001288 renal glomerulus renal glomerulus microvillus protruding into renal capsular space , abnormal
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 ZFA:0001673 pronephric podocyte pronephric podocyte decreased amount , abnormal
pronephric podocyte podocyte foot malformed , abnormal
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 ZFA:0005285 glomerular basement membrane glomerular basement membrane podocyte foot morphology , abnormal
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 ZFA:0005309 pronephric glomerular capillary pronephric glomerular capillary collapsed , abnormal
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 ZFA:0005312 pronephric capsular space pronephric capsular space increased size , abnormal
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 ZFA:0009285 podocyte podocyte disorganized , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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