ENSDARG00000007885


Danio rerio

Features
Gene ID: ENSDARG00000007885
  
Biological name :fancl
  
Synonyms : fancl / Fanconi anemia, complementation group L
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase FANCL / Q9CR14 / Q9NW38
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 26703897
Gene end: 26780797
  
Corresponding Affymetrix probe sets: Dr.24655.1.A1_at (Zebrafish Array)   NM_212982_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000003498
NCBI entrez gene - 406255     See in Manteia.
RefSeq - NM_212982
RefSeq Peptide - NP_998147
swissprot - B8JHS6
ZFIN ID - ZDB-GENE-040426-1045
Ensembl - ENSDARG00000007885
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FANCLENSGALG00000030022Gallus gallus
 FANCLENSG00000115392Homo sapiens
 FanclENSMUSG00000004018Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019162  Fanconi anemia complex, subunit FancL, WD-repeat containing domain
 IPR026850  FANCL C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0048599 oocyte development IMP
 cellular_componentGO:0043240 Fanconi anaemia nuclear complex IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity ISS


Pathways (from Reactome)
Pathway description
Fanconi Anemia Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000303 female organism female organism absent , abnormal
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 ZFA:0000403 ovary ovary absent , abnormal
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 ZFA:0001109 oocyte oocyte absent , abnormal
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 ZFA:0001567 oocyte stage I oocyte stage I absent , abnormal
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 ZFA:0009288 primordial germ cell primordial germ cell apoptotic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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