ENSDARG00000011079


Danio rerio

Features
Gene ID: ENSDARG00000011079
  
Biological name :wdr3
  
Synonyms : wdr3 / WD repeat domain 3
  
Possible biological names infered from orthology : Q8BHB4 / Q9UNX4
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 20853894
Gene end: 20872565
  
Corresponding Affymetrix probe sets: Dr.25180.1.S1_at (Zebrafish Array)   Dr.2528.1.S1_a_at (Zebrafish Array)   Dr.2528.1.S1_x_at (Zebrafish Array)   Dr.2528.2.S1_at (Zebrafish Array)   NM_198873_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000023281
Ensembl peptide - ENSDARP00000116100
NCBI entrez gene - 321058     See in Manteia.
RefSeq - NM_198873
RefSeq Peptide - NP_942574
swissprot - B0S6A9
swissprot - B0S6A8
ZFIN ID - ZDB-GENE-030131-9830
Ensembl - ENSDARG00000011079
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 WDR3ENSGALG00000014791Gallus gallus
 WDR3ENSG00000065183Homo sapiens
 Wdr3ENSMUSG00000033285Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-154o6.3ENSDARG000000998467


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR007148  Small-subunit processome, Utp12
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR024977  Anaphase-promoting complex subunit 4, WD40 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030490 maturation of SSU-rRNA IBA
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0034388 Pwp2p-containing subcomplex of 90S preribosome IBA
 molecular_functionGO:0030515 snoRNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr