ENSDARG00000011201


Danio rerio

Features
Gene ID: ENSDARG00000011201
  
Biological name :rplp2l
  
Synonyms : ribosomal protein, large P2, like / rplp2l
  
Possible biological names infered from orthology : 60S acidic ribosomal protein P2 / P05387 / P99027 / ribosomal protein lateral stalk subunit P2 / RPLP2
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 12959846
Gene end: 12968701
  
Corresponding Affymetrix probe sets: Dr.23788.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000142448
Ensembl peptide - ENSDARP00000022552
NCBI entrez gene - 558312     See in Manteia.
RefSeq - NM_001100436
RefSeq Peptide - NP_001093906
swissprot - A7E2K4
ZFIN ID - ZDB-GENE-070327-2
Ensembl - ENSDARG00000011201
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPLP2ENSGALG00000034811Gallus gallus
 RPLP2ENSG00000177600Homo sapiens
 Rplp2ENSMUSG00000025508Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rplp2 / ribosomal protein, large P2ENSDARG0000010140674


Protein motifs (from Interpro)
Interpro ID Name
 IPR027534  Ribosomal protein L12 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006414 translational elongation IEA
 biological_processGO:0043009 chordate embryonic development IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000006 ball ball increased size , abnormal
ball opaque , abnormal
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 ZFA:0000035 lens lens decreased size , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary aplastic , abnormal
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 ZFA:0000079 telencephalon telencephalon hypoplastic , abnormal
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 ZFA:0000100 cerebellum cerebellum decreased thickness , abnormal
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 ZFA:0000106 extension extension decreased length , abnormal
extension decreased thickness , abnormal
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 ZFA:0000108 fin fin aplastic , abnormal
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 ZFA:0000109 forebrain forebrain protruding , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle increased size , abnormal
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 ZFA:0000135 notochord notochord bent , abnormal
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 ZFA:0000138 otic placode otic placode decreased size , abnormal
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 ZFA:0000152 retina retina decreased size , abnormal
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 ZFA:0000160 tegmentum tegmentum opaque , abnormal
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 ZFA:0000559 otolith organ otolith organ decreased size , abnormal
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 ZFA:0001117 post-vent region post-vent region bent , abnormal
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 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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