ENSDARG00000011222


Danio rerio

Features
Gene ID: ENSDARG00000011222
  
Biological name :ccdc28b
  
Synonyms : ccdc28b / coiled-coil domain containing 28B
  
Possible biological names infered from orthology : Coiled-coil domain-containing protein 28B / Q8CEG5 / Q9BUN5
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 33282095
Gene end: 33293654
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000120515
NCBI entrez gene - 559814     See in Manteia.
RefSeq - NM_001145573
RefSeq Peptide - NP_001139045
swissprot - B8A4M8
ZFIN ID - ZDB-GENE-060208-3
Ensembl - ENSDARG00000011222
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CCDC28BENSGALG00000003241Gallus gallus
 Q9BUN5ENSG00000160050Homo sapiens
 Q8CEG5ENSMUSG00000028795Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ccdc28a / coiled-coil domain containing 28A / Q8IWP9*ENSDARG0000002298347


Protein motifs (from Interpro)
Interpro ID Name
 IPR025271  Domain of unknown function DUF4061


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0060271 cilium assembly IMP
 cellular_componentGO:0005813 centrosome IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle cilium decreased length , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle hydrocephalic , abnormal
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 ZFA:0000130 olfactory pit olfactory pit cilium disorganized , abnormal
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 ZFA:0000135 notochord notochord increased width , abnormal
notochord kinked , abnormal
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 ZFA:0000150 pronephric duct pronephric duct cilium disorganized , abnormal
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 ZFA:0000151 pronephros pronephros decreased functionality , abnormal
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 ZFA:0000155 somite somite shape , abnormal
somite increased width , abnormal
somite disorganized , abnormal
somite filamentous actin disorganized , abnormal
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 ZFA:0000737 cranium cranium malformed , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
whole organism curved , abnormal
whole organism decreased length , abnormal
Show

 ZFA:0001117 post-vent region post-vent region morphology , abnormal
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 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage malformed , abnormal
Show

 ZFA:0001462 somite border somite border amorphous , abnormal
somite border morphology , abnormal
Show

 ZFA:0009000 cell cell detached from neural tube , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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