ENSDARG00000011240


Danio rerio

Features
Gene ID: ENSDARG00000011240
  
Biological name :ift46
  
Synonyms : ift46 / intraflagellar transport 46 homolog (Chlamydomonas)
  
Possible biological names infered from orthology : Intraflagellar transport / intraflagellar transport 46 / Q9DB07 / Q9NQC8
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 29735900
Gene end: 29744921
  
Corresponding Affymetrix probe sets: Dr.14552.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000124580
Ensembl peptide - ENSDARP00000083038
NCBI entrez gene - 565922     See in Manteia.
RefSeq - NM_001346250
RefSeq Peptide - NP_001333179
swissprot - F8W2W9
swissprot - F1QMN4
ZFIN ID - ZDB-GENE-080102-3
Ensembl - ENSDARG00000011240
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000007438Gallus gallus
 IFT46ENSG00000118096Homo sapiens
 Ift46ENSMUSG00000002031Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR022088  Intraflagellar transport complex B protein 46


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042073 intraciliary transport IEA
 cellular_componentGO:0005929 cilium IEA


Pathways (from Reactome)
Pathway description
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000051 otic vesicle otic vesicle cilium absent , abnormal
otic vesicle cilium decreased length , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000130 olfactory pit olfactory pit cilium decreased length , abnormal
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 ZFA:0000150 pronephric duct pronephric duct motile cilium decreased length , abnormal
pronephric duct motile cilium disorganized , abnormal
pronephric duct dilated , abnormal
pronephric duct cilium decreased amount , abnormal
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 ZFA:0000151 pronephros pronephros cystic , abnormal
Show

 ZFA:0001094 whole organism whole organism has extra parts of type post-vent region , abnormal
whole organism wholly dorsalized , abnormal
whole organism ovate , abnormal
Show

 ZFA:0001115 trunk trunk anatomical axis curved , abnormal
Show

 ZFA:0001117 post-vent region post-vent region mislocalised , abnormal
post-vent region structure , abnormal
post-vent region decreased length , abnormal
post-vent region curved dorsal , abnormal
Show

 ZFA:0001466 photoreceptor outer segment layer photoreceptor outer segment layer decreased thickness , abnormal
Show

 ZFA:0001557 pronephric glomerulus pronephric glomerulus cystic , abnormal
Show

 ZFA:0009367 neuromast hair cell neuromast hair cell kinocilium decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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