ENSDARG00000011925


Danio rerio

Features
Gene ID: ENSDARG00000011925
  
Biological name :spns1
  
Synonyms : spinster homolog 1 (Drosophila) / spns1
  
Possible biological names infered from orthology : 1 / Q8R0G7 / Q9H2V7 / sphingolipid transporter 1 (putative)
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 15455319
Gene end: 15475080
  
Corresponding Affymetrix probe sets: Dr.6504.1.S1_at (Zebrafish Array)   NM_153663_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000122340
Ensembl peptide - ENSDARP00000009970
Ensembl peptide - ENSDARP00000151373
NCBI entrez gene - 799873     See in Manteia.
RefSeq - NM_153663
RefSeq - XM_005163832
RefSeq Peptide - NP_705949
swissprot - G1K2F4
swissprot - E9QH48
ZFIN ID - ZDB-GENE-020228-1
Ensembl - ENSDARG00000011925
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SPNS1ENSG00000169682Homo sapiens
 1 ENSMUSG00000030741Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
spns3 / A2CER7 / spinster homolog 3 (Drosophila) / 3 * / Q9D232* / Q6ZMD2* / sphingolipid transporter 3 (putative)*ENSDARG0000003545952


Protein motifs (from Interpro)
Interpro ID Name
 IPR011701  Major facilitator superfamily
 IPR020846  Major facilitator superfamily domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000084 yolk yolk opaque , abnormal
yolk necrotic , abnormal
yolk dark grey , abnormal
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 ZFA:0000106 extension extension absent , abnormal
extension decreased thickness , abnormal
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 ZFA:0000123 liver liver composition , abnormal
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 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism decreased life span , abnormal
whole organism necrotic , abnormal
whole organism edematous , abnormal
whole organism lethal (sensu genetics) , abnormal
whole organism quality , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
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 ZFA:0005145 muscle muscle composition , abnormal
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 ZFA:0009000 cell cell autophagosome accumulation cell perinuclear region of cytoplasm, abnormal
cell autolysosome accumulation cell perinuclear region of cytoplasm, abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
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