ENSDARG00000012325


Danio rerio

Features
Gene ID: ENSDARG00000012325
  
Biological name :zgc:110269
  
Synonyms : B0UXL7 / zgc:110269
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 16449627
Gene end: 16458472
  
Corresponding Affymetrix probe sets: Dr.13872.1.A1_at (Zebrafish Array)   Dr.13872.2.A1_at (Zebrafish Array)   NM_001017611_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000017784
Ensembl peptide - ENSDARP00000091080
NCBI entrez gene - 550274     See in Manteia.
RefSeq - NM_001017611
RefSeq Peptide - NP_001017611
swissprot - F1QYB4
swissprot - B0UXL7
ZFIN ID - ZDB-GENE-050417-81
Ensembl - ENSDARG00000012325
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
fen1 / Q6TNU4 / flap structure-specific endonuclease 1 / P39748*ENSDARG0000001140443
FO834823.1 / GEN1* / Q17RS7* / GEN1, Holliday junction 5 flap endonuclease*ENSDARG0000011245119


Protein motifs (from Interpro)
Interpro ID Name
 IPR006084  XPG/Rad2 endonuclease
 IPR006085  XPG N-terminal
 IPR006086  XPG-I domain
 IPR008918  Helix-hairpin-helix motif, class 2
 IPR020045  DNA polymerase I-like, H3TH domain
 IPR029060  PIN-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005739 mitochondrion IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004519 endonuclease activity IEA
 molecular_functionGO:0004527 exonuclease activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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