ENSDARG00000015128


Danio rerio

Features
Gene ID: ENSDARG00000015128
  
Biological name :rpl27
  
Synonyms : Q7ZV82 / ribosomal protein L27 / rpl27
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 29893966
Gene end: 29899230
  
Corresponding Affymetrix probe sets: Dr.24671.1.S1_at (Zebrafish Array)   NM_199724_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000117864
Ensembl peptide - ENSDARP00000018737
NCBI entrez gene - 325618     See in Manteia.
RefSeq - NM_199724
RefSeq Peptide - NP_956018
swissprot - B2GP62
swissprot - Q7ZV82
ZFIN ID - ZDB-GENE-030131-4343
Ensembl - ENSDARG00000015128
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BX901883.4 / RPL27* / P61353* / ribosomal protein L27*ENSDARG0000011366418


Protein motifs (from Interpro)
Interpro ID Name
 IPR001141  Ribosomal protein L27e
 IPR005824  KOW
 IPR008991  Translation protein SH3-like domain superfamily
 IPR014722  Ribosomal protein L2, domain 2
 IPR018262  Ribosomal protein L27e, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0030218 erythrocyte differentiation IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005791 rough endoplasmic reticulum IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015934 large ribosomal subunit ISS
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 cellular_componentGO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane ISS
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0001117 post-vent region post-vent region bent , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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