ENSDARG00000020483


Danio rerio

Features
Gene ID: ENSDARG00000020483
  
Biological name :lta
  
Synonyms : lta / lymphotoxin alpha (TNF superfamily, member 1)
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 34675660
Gene end: 34681272
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000004968
NCBI entrez gene - 554305     See in Manteia.
RefSeq - NM_001024821
RefSeq Peptide - NP_001019992
swissprot - Q4W897
ZFIN ID - ZDB-GENE-050601-3
Ensembl - ENSDARG00000020483
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006052  Tumour necrosis factor domain
 IPR008983  Tumour necrosis factor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002237 response to molecule of bacterial origin IDA
 biological_processGO:0006955 immune response IEA
 biological_processGO:0032496 response to lipopolysaccharide IDA
 biological_processGO:0043330 response to exogenous dsRNA IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005164 tumor necrosis factor receptor binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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