ENSDARG00000020607


Danio rerio

Features
Gene ID: ENSDARG00000020607
  
Biological name :emc3
  
Synonyms : emc3 / ER membrane protein complex subunit 3 / Q7SXW4
  
Possible biological names infered from orthology : Q99KI3 / Q9P0I2
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 42369999
Gene end: 42377307
  
Corresponding Affymetrix probe sets: Dr.17507.1.S1_at (Zebrafish Array)   Dr.9437.1.A1_at (Zebrafish Array)   NM_213505_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000106382
NCBI entrez gene - 406826     See in Manteia.
RefSeq - NM_213505
RefSeq Peptide - NP_998670
swissprot - Q7SXW4
ZFIN ID - ZDB-GENE-040426-2904
Ensembl - ENSDARG00000020607
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EMC3ENSGALG00000003738Gallus gallus
 EMC3ENSG00000125037Homo sapiens
 Emc3ENSMUSG00000030286Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:86609ENSDARG0000002947977


Protein motifs (from Interpro)
Interpro ID Name
 IPR002809  Integral membrane protein EMC3/TMCO1-like
 IPR008568  ER membrane protein complex subunit 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0034975 protein folding in endoplasmic reticulum IBA
 biological_processGO:0045494 photoreceptor cell maintenance IMP
 biological_processGO:0060041 retina development in camera-type eye IMP
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane ISS
 cellular_componentGO:0030140 trans-Golgi network transport vesicle IDA
 cellular_componentGO:0072546 ER membrane protein complex ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye quality , abnormal
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 ZFA:0000143 retinal photoreceptor layer retinal photoreceptor layer decreased thickness , abnormal
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 ZFA:0000282 sensory system sensory system quality , abnormal
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 ZFA:0009262 retinal cone cell retinal cone cell degenerate , abnormal
retinal cone cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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