ENSDARG00000020820


Danio rerio

Features
Gene ID: ENSDARG00000020820
  
Biological name :srp68
  
Synonyms : signal recognition particle 68 / srp68
  
Possible biological names infered from orthology : Q8BMA6 / Q9UHB9 / Signal recognition particle subunit SRP68
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 23026170
Gene end: 23057363
  
Corresponding Affymetrix probe sets: Dr.25717.1.A1_at (Zebrafish Array)   NM_001005401_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000111715
Ensembl peptide - ENSDARP00000153975
NCBI entrez gene - 446119     See in Manteia.
RefSeq - NM_001005401
RefSeq Peptide - NP_001005401
swissprot - F1QI99
swissprot - A7YYE9
ZFIN ID - ZDB-GENE-040831-3
Ensembl - ENSDARG00000020820
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SRP68ENSGALG00000002062Gallus gallus
 SRP68ENSG00000167881Homo sapiens
 Srp68ENSMUSG00000020780Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR026258  Signal recognition particle subunit SRP68
 IPR034652  Signal recognition particle subunit SRP68, RNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane IEA
 biological_processGO:0045047 protein targeting to ER IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IBA
 cellular_componentGO:0005786 signal recognition particle, endoplasmic reticulum targeting IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005047 signal recognition particle binding IBA
 molecular_functionGO:0008312 7S RNA binding IEA
 molecular_functionGO:0030942 endoplasmic reticulum signal peptide binding IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000095 pharyngeal arch 3-7 skeleton pharyngeal arch 3-7 skeleton quality , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
head edematous , abnormal
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 ZFA:0001501 cartilage element cartilage element morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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