ENSDARG00000024561


Danio rerio

Features
Gene ID: ENSDARG00000024561
  
Biological name :nolc1
  
Synonyms : nolc1 / nucleolar and coiled-body phosphoprotein 1
  
Possible biological names infered from orthology : E9Q5C9 / Q14978
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 4973211
Gene end: 4992395
  
Corresponding Affymetrix probe sets: Dr.5522.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000093426
Ensembl peptide - ENSDARP00000141453
Ensembl peptide - ENSDARP00000134062
Ensembl peptide - ENSDARP00000121596
NCBI entrez gene - 561131     See in Manteia.
RefSeq - NM_001256652
RefSeq - XM_009307086
RefSeq Peptide - NP_001243581
swissprot - F1R6Q8
swissprot - B8JIY2
swissprot - A0A0R4IZ98
swissprot - A0A0R4IFR7
ZFIN ID - ZDB-GENE-030131-6349
Ensembl - ENSDARG00000024561
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOLC1ENSGALG00000041124Gallus gallus
 NOLC1ENSG00000166197Homo sapiens
 Nolc1ENSMUSG00000015176Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006594  LIS1 homology motif
 IPR007718  SRP40, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain apoptotic , abnormal
brain hypoplastic , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary apoptotic , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle hypoplastic , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut malformed , abnormal
gut quality , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0000123 liver liver quality , abnormal
Show

 ZFA:0000152 retina retina apoptotic , abnormal
Show

 ZFA:0000351 olfactory region olfactory region hypoplastic , abnormal
Show

 ZFA:0000570 optic primordium optic primordium malformed , abnormal
Show

 ZFA:0001094 whole organism whole organism increased amount , abnormal
whole organism decreased amount , abnormal
Show

 ZFA:0001114 head head truncated , abnormal
head circular , abnormal
head quality , abnormal
head apoptotic , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage shape , abnormal
Meckels cartilage decreased length , abnormal
Show

 ZFA:0001306 pharyngeal arch pharyngeal arch decreased size , abnormal
Show

 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage decreased size , abnormal
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage malformed , abnormal
ceratohyal cartilage obtuse angle to ceratohyal cartilage , abnormal
Show

 ZFA:0001405 ethmoid cartilage ethmoid cartilage decreased size , abnormal
ethmoid cartilage malformed , abnormal
Show

 ZFA:0001422 hyosymplectic cartilage hyosymplectic cartilage decreased size , abnormal
Show

 ZFA:0001458 cranial cartilage cranial cartilage hypoplastic , abnormal
cranial cartilage chondrocyte circular , abnormal
cranial cartilage chondrocyte increased size , abnormal
cranial cartilage chondrocyte disorganized , abnormal
cranial cartilage morphology , abnormal
Show

 ZFA:0001516 ceratobranchial cartilage ceratobranchial cartilage malformed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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