ENSDARG00000029931


Danio rerio

Features
Gene ID: ENSDARG00000029931
  
Biological name :atp13a1
  
Synonyms : atp13a1 / ATPase 13A1
  
Possible biological names infered from orthology : Manganese-transporting ATPase 13A1 / Q9EPE9 / Q9HD20
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 52899801
Gene end: 52952026
  
Corresponding Affymetrix probe sets: Dr.11388.1.S1_at (Zebrafish Array)   NM_001001403_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000058957
NCBI entrez gene - 334466     See in Manteia.
RefSeq - NM_001001403
RefSeq Peptide - NP_001001403
swissprot - F1R1X4
ZFIN ID - ZDB-GENE-040426-2804
Ensembl - ENSDARG00000029931
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9HD20ENSG00000105726Homo sapiens
 Q9EPE9ENSMUSG00000031862Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001757  P-type ATPase
 IPR006544  P-type ATPase, subfamily V
 IPR008250  P-type ATPase, A domain superfamily
 IPR018303  P-type ATPase, phosphorylation site
 IPR023214  HAD superfamily
 IPR023298  P-type ATPase, transmembrane domain superfamily
 IPR023299  P-type ATPase, cytoplasmic domain N


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006812 cation transport IEA
 biological_processGO:0006874 cellular calcium ion homeostasis IBA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 biological_processGO:0099132 ATP hydrolysis coupled cation transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005388 calcium-transporting ATPase activity IBA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Ion transport by P-type ATPases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr