ENSDARG00000030095


Danio rerio

Features
Gene ID: ENSDARG00000030095
  
Biological name :ccdc78
  
Synonyms : ccdc78 / coiled-coil domain containing 78
  
Possible biological names infered from orthology : A2IDD5 / Coiled-coil domain-containing protein 78 / D3Z5T1
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 37902687
Gene end: 37921940
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000042272
Ensembl peptide - ENSDARP00000129850
NCBI entrez gene - 100150366     See in Manteia.
RefSeq - XM_021473812
RefSeq - XM_021474563
RefSeq - XM_001919778
swissprot - X1WHY5
swissprot - E7F7G2
ZFIN ID - ZDB-GENE-060301-1
Ensembl - ENSDARG00000030095
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000043922Gallus gallus
 ENSGALG00000044070Gallus gallus
 A2IDD5ENSG00000162004Homo sapiens
 Ccdc78ENSMUSG00000071202Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR029329  Domain of unknown function DUF4472


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048741 skeletal muscle fiber development IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism decreased size , abnormal
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 ZFA:0001117 post-vent region post-vent region bent , abnormal
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 ZFA:0005277 skeletal muscle skeletal muscle myofibril disorganized , abnormal
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 ZFA:0009115 skeletal muscle cell skeletal muscle cell has extra parts of type skeletal muscle cell membrane, abnormal
skeletal muscle cell sarcoplasmic reticulum dilated , abnormal
skeletal muscle cell sarcoplasmic reticulum swollen , abnormal
skeletal muscle cell T-tubule dilated , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr