ENSDARG00000031366


Danio rerio

Features
Gene ID: ENSDARG00000031366
  
Biological name :rtn4ip1
  
Synonyms : reticulon 4 interacting protein 1 / rtn4ip1
  
Possible biological names infered from orthology : Q8WWV3
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 25550235
Gene end: 25563847
  
Corresponding Affymetrix probe sets: Dr.16642.1.S1_at (Zebrafish Array)   NM_200352_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000040031
NCBI entrez gene - 393323     See in Manteia.
RefSeq - NM_200352
RefSeq Peptide - NP_956646
swissprot - F1QZY9
ZFIN ID - ZDB-GENE-040426-1314
Ensembl - ENSDARG00000031366
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RTN4IP1ENSGALG00000015343Gallus gallus
 Q8WWV3ENSG00000130347Homo sapiens
 Rtn4ip1ENSMUSG00000019864Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011032  GroES-like superfamily
 IPR013154  Alcohol dehydrogenase, N-terminal
 IPR016040  NAD(P)-binding domain
 IPR020843  Polyketide synthase, enoylreductase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005739 mitochondrion IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000024 retinal ganglion cell layer retinal ganglion cell layer absent , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000152 retina retina disorganized , abnormal
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 ZFA:0001094 whole organism whole organism decreased mobility , abnormal
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 ZFA:0001329 retinal inner plexiform layer retinal inner plexiform layer absent , abnormal
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 ZFA:0001330 retinal outer plexiform layer retinal outer plexiform layer absent , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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