ENSDARG00000031562


Danio rerio

Features
Gene ID: ENSDARG00000031562
  
Biological name :tada2a
  
Synonyms : tada2a / transcriptional adaptor 2A
  
Possible biological names infered from orthology : Q8CHV6 / Transcriptional adapter 2-alpha
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 15786160
Gene end: 15819598
  
Corresponding Affymetrix probe sets: Dr.12657.1.A1_at (Zebrafish Array)   NM_001077141_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000085372
Ensembl peptide - ENSDARP00000111548
NCBI entrez gene - 797303     See in Manteia.
RefSeq - NM_001077141
RefSeq Peptide - NP_001070609
swissprot - F1QRL2
swissprot - E7EZS5
ZFIN ID - ZDB-GENE-060929-508
Ensembl - ENSDARG00000031562
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TADA2AENSGALG00000005452Gallus gallus
 TADA2AENSG00000276234Homo sapiens
 Q8CHV6ENSMUSG00000018651Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tada2b / transcriptional adaptor 2B / Q86TJ2*ENSDARG0000000376927


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR007526  SWIRM domain
 IPR009057  Homeobox-like domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR016827  Transcriptional adaptor 2
 IPR017884  SANT domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006338 chromatin remodeling IBA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0016573 histone acetylation IEA
 biological_processGO:0035065 regulation of histone acetylation IEA
 biological_processGO:0035066 positive regulation of histone acetylation IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0070461 SAGA-type complex IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0003713 transcription coactivator activity IBA
 molecular_functionGO:0004402 histone acetyltransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr