ENSDARG00000035507


Danio rerio

Features
Gene ID: ENSDARG00000035507
  
Biological name :ddx31
  
Synonyms : ddx31 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 31
  
Possible biological names infered from orthology : DEAD-box helicase 31 / Probable ATP-dependent RNA helicase DDX31 / Q6NZQ2 / Q9H8H2
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 29714786
Gene end: 29745566
  
Corresponding Affymetrix probe sets: Dr.3281.1.A1_at (Zebrafish Array)   Dr.7284.1.A1_at (Zebrafish Array)   XM_678740_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000119101
Ensembl peptide - ENSDARP00000147764
Ensembl peptide - ENSDARP00000123604
NCBI entrez gene - 325248     See in Manteia.
RefSeq - XM_678740
swissprot - A2BFD2
swissprot - A2BFD1
ZFIN ID - ZDB-GENE-030131-3973
Ensembl - ENSDARG00000035507
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX31ENSGALG00000041473Gallus gallus
 DDX31ENSG00000125485Homo sapiens
 Ddx31ENSMUSG00000026806Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR025313  Domain of unknown function DUF4217
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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