ENSDARG00000036628


Danio rerio

Features
Gene ID: ENSDARG00000036628
  
Biological name :cd74b
  
Synonyms : cd74b / CD74 molecule, major histocompatibility complex, class II invariant chain b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 33459524
Gene end: 33463894
  
Corresponding Affymetrix probe sets: Dr.7780.1.S1_at (Zebrafish Array)   NM_131372_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000053204
NCBI entrez gene - 30645     See in Manteia.
RefSeq - NM_131372
RefSeq Peptide - NP_571447
swissprot - Q9PVD9
ZFIN ID - ZDB-GENE-990910-10
Ensembl - ENSDARG00000036628
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000716  Thyroglobulin type-1
 IPR015386  MHC class II-associated invariant chain/CLIP, MHC II-interacting


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006955 immune response IEA
 biological_processGO:0019882 antigen processing and presentation IEA
 biological_processGO:0048839 inner ear development IGI
 biological_processGO:0048884 neuromast development IGI
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0042289 MHC class II protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain decreased size , abnormal
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 ZFA:0000030 macula utricle macula utricle has fewer parts of type hair cell , abnormal
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 ZFA:0000431 semicircular canal semicircular canal malformed , abnormal
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 ZFA:0000588 statoacoustic (VIII) ganglion statoacoustic (VIII) ganglion has fewer parts of type neuroblast , abnormal
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 ZFA:0000940 posterior lateral line neuromast posterior lateral line neuromast decreased amount , abnormal
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 ZFA:0001094 whole organism whole organism curved ventral , abnormal
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 ZFA:0001472 anterior lateral line neuromast anterior lateral line neuromast decreased amount , abnormal
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 ZFA:0001717 pillar of the semicircular canal pillar of the semicircular canal unfused from pillar of the semicircular canal , abnormal
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 ZFA:0007000 macula saccule macula saccule has fewer parts of type hair cell , abnormal
Show

 ZFA:0009065 endothelial cell endothelial cell apoptotic process increased occurrence , abnormal
Show

 ZFA:0009367 neuromast hair cell neuromast hair cell morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
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