ENSDARG00000036875


Danio rerio

Features
Gene ID: ENSDARG00000036875
  
Biological name :rps12
  
Synonyms : ribosomal protein S12 / rps12
  
Possible biological names infered from orthology : P25398 / ribosomal protein S12, pseudogene 3 / Rps12-ps3
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 31431956
Gene end: 31435922
  
Corresponding Affymetrix probe sets: Dr.1202.2.S1_at (Zebrafish Array)   NM_200046_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000053541
Ensembl peptide - ENSDARP00000120403
NCBI entrez gene - 337007     See in Manteia.
RefSeq - NM_200046
RefSeq - NM_001282177
RefSeq Peptide - NP_001269106
RefSeq Peptide - NP_956340
swissprot - Q6PC90
ZFIN ID - ZDB-GENE-030131-8951
Ensembl - ENSDARG00000036875
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS12ENSGALG00000013990Gallus gallus
 RPS12ENSG00000112306Homo sapiens
 Rps12ENSMUSG00000061983Mus musculus
 Rps12-ps3ENSMUSG00000067038Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000530  Ribosomal protein S12e
 IPR004038  Ribosomal protein L7Ae/L30e/S12e/Gadd45
 IPR029064  50S ribosomal protein L30e-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
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 ZFA:0001094 whole organism whole organism quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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