ENSDARG00000037855


Danio rerio

Features
Gene ID: ENSDARG00000037855
  
Biological name :taf11
  
Synonyms : taf11 / TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
  
Possible biological names infered from orthology : A6NLC8 / AC106774.10 / AC106774.5 / AC106774.6 / AC106774.7 / AC106774.8 / AC106774.9 / AC233724.12 / AC233724.15 / AC233724.16 / AC233724.17 / AC233724.18 / AC233724.19 / AC233724.20 / AC233724.6 / Putative TAF11-like protein ENSP00000332601 / Q15544 / Q99JX1 / TATA-box binding protein associated factor 11 / Transcription initiation factor TFIID subunit 11
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 309063
Gene end: 315437
  
Corresponding Affymetrix probe sets: Dr.15759.1.A1_at (Zebrafish Array)   Dr.15759.1.A1_a_at (Zebrafish Array)   Dr.15759.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000055151
Ensembl peptide - ENSDARP00000113280
Ensembl peptide - ENSDARP00000121547
NCBI entrez gene - 436821     See in Manteia.
swissprot - A8KBY5
swissprot - E9QGH9
ZFIN ID - ZDB-GENE-040718-283
Ensembl - ENSDARG00000037855
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF11ENSGALG00000002735Gallus gallus
 A6NLC8ENSG00000284373Homo sapiens
 AC106774.10ENSG00000284552Homo sapiens
 AC106774.5ENSG00000284042Homo sapiens
 AC106774.6ENSG00000284234Homo sapiens
 AC106774.7ENSG00000284283Homo sapiens
 AC106774.9ENSG00000284439Homo sapiens
 AC233724.12ENSG00000250782Homo sapiens
 AC233724.15ENSG00000283740Homo sapiens
 AC233724.16ENSG00000283776Homo sapiens
 AC233724.17ENSG00000283967Homo sapiens
 AC233724.18ENSG00000283988Homo sapiens
 AC233724.19ENSG00000284356Homo sapiens
 AC233724.20ENSG00000284465Homo sapiens
 AC233724.6ENSG00000249156Homo sapiens
 TAF11ENSG00000064995Homo sapiens
 Taf11ENSMUSG00000024218Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006809  TAFII28-like protein
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IBA
 biological_processGO:1903506 regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IBA
 molecular_functionGO:0003713 transcription coactivator activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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