ENSDARG00000038114


Danio rerio

Features
Gene ID: ENSDARG00000038114
  
Biological name :xpa
  
Synonyms : xeroderma pigmentosum, complementation group A / xpa
  
Possible biological names infered from orthology : P23025 / Q64267 / XPA, DNA damage recognition and repair factor
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 12068800
Gene end: 12097818
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000055565
NCBI entrez gene - 393443     See in Manteia.
RefSeq - NM_200471
RefSeq Peptide - NP_956765
swissprot - F1R092
ZFIN ID - ZDB-GENE-040426-1205
Ensembl - ENSDARG00000038114
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 XPAENSGALG00000028998Gallus gallus
 XPAENSG00000136936Homo sapiens
 XpaENSMUSG00000028329Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000465  XPA
 IPR009061  Putative DNA-binding domain superfamily
 IPR022652  Zinc finger, XPA-type, conserved site
 IPR022656  XPA, C-terminal
 IPR027838  Domain of unknown function DUF4585


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000715 nucleotide-excision repair, DNA damage recognition IBA
 biological_processGO:0006284 base-excision repair IBA
 biological_processGO:0006289 nucleotide-excision repair IEA
 biological_processGO:0033683 nucleotide-excision repair, DNA incision IBA
 biological_processGO:0070914 UV-damage excision repair IBA
 biological_processGO:1901255 nucleotide-excision repair involved in interstrand cross-link repair IBA
 cellular_componentGO:0000110 nucleotide-excision repair factor 1 complex IBA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003684 damaged DNA binding IEA


Pathways (from Reactome)
Pathway description
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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