ENSDARG00000038780


Danio rerio

Features
Gene ID: ENSDARG00000038780
  
Biological name :ubtfl
  
Synonyms : ubtfl / upstream binding transcription factor, like
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 32357226
Gene end: 32387441
  
Corresponding Affymetrix probe sets: Dr.15941.1.A1_at (Zebrafish Array)   NM_201003_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118044
Ensembl peptide - ENSDARP00000155063
Ensembl peptide - ENSDARP00000123462
Ensembl peptide - ENSDARP00000121572
Ensembl peptide - ENSDARP00000120239
Ensembl peptide - ENSDARP00000119701
Ensembl peptide - ENSDARP00000056633
Ensembl peptide - ENSDARP00000116387
NCBI entrez gene - 393978     See in Manteia.
RefSeq - NM_201003
RefSeq - XM_017357972
RefSeq Peptide - NP_957297
swissprot - B0S7C0
swissprot - B0S7B9
swissprot - F1QCQ1
swissprot - F1R7C9
swissprot - B0S7C3
swissprot - B0S7C2
swissprot - B0S7C1
ZFIN ID - ZDB-GENE-040426-1159
Ensembl - ENSDARG00000038780
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ubtf / upstream binding transcription factor, RNA polymerase I / P17480* / Q3USZ2* / P0CB47* / UBTFL1* / upstream binding transcription factor, RNA polymerase I-like 1*ENSDARG0000003506656


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR029215  High mobility group box domain 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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