ENSDARG00000039117


Danio rerio

Features
Gene ID: ENSDARG00000039117
  
Biological name :tefa
  
Synonyms : tefa / thyrotrophic embryonic factor a
  
Possible biological names infered from orthology : Q10587 / Q9JLC6 / TEF / TEF, PAR bZIP transcription factor / Thyrotroph embryonic factor
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 19144833
Gene end: 19153177
  
Corresponding Affymetrix probe sets: Dr.578.1.A1_at (Zebrafish Array)   Dr.578.2.S1_a_at (Zebrafish Array)   NM_131400_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000057123
Ensembl peptide - ENSDARP00000057124
NCBI entrez gene - 30674     See in Manteia.
RefSeq - NM_131400
RefSeq Peptide - NP_571475
swissprot - O57673
swissprot - Q9W722
ZFIN ID - ZDB-GENE-990415-264
Ensembl - ENSDARG00000039117
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TEFENSGALG00000011958Gallus gallus
 TEFENSG00000167074Homo sapiens
 TefENSMUSG00000022389Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tefb / thyrotrophic embryonic factor b / TEF* / Q9JLC6* / Q10587* / Thyrotroph embryonic factor * / TEF, PAR bZIP transcription factor*ENSDARG0000009810357
hlfa / hepatic leukemia factor a / HLF* / Q16534* / HLF, PAR bZIP transcription factor*ENSDARG0000007475246
dbpa / D site albumin promoter binding protein a / DBP* / Q10586* / Q60925* / D site-binding protein * / D-box binding PAR bZIP transcription factor*ENSDARG0000006301444
hlfb / hepatic leukemia factor b / HLF* / Q16534* / Q8BW74* / Hepatic leukemia factor * / HLF, PAR bZIP transcription factor*ENSDARG0000006101143
dbpb / D site albumin promoter binding protein b / DBP* / Q10586* / Q60925* / D site-binding protein * / D-box binding PAR bZIP transcription factor*ENSDARG0000005765240
CABZ01087224.1ENSDARG0000011126920


Protein motifs (from Interpro)
Interpro ID Name
 IPR004827  Basic-leucine zipper domain
 IPR029832  Thyrotroph embryonic factor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IBA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0071482 cellular response to light stimulus IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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