ENSDARG00000039521


Danio rerio

Features
Gene ID: ENSDARG00000039521
  
Biological name :ssx2ipa
  
Synonyms : ssx2ipa / synovial sarcoma, X breakpoint 2 interacting protein a
  
Possible biological names infered from orthology : Q8VC66 / Q9Y2D8 / SSX2IP / SSX family member 2 interacting protein / synovial sarcoma, X 2 interacting protein
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 1988036
Gene end: 2008463
  
Corresponding Affymetrix probe sets: Dr.14962.1.S1_at (Zebrafish Array)   Dr.20703.1.A1_at (Zebrafish Array)   Dr.23526.1.A1_at (Zebrafish Array)   NM_200835_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000128882
Ensembl peptide - ENSDARP00000129572
Ensembl peptide - ENSDARP00000150617
NCBI entrez gene - 393808     See in Manteia.
RefSeq - XM_009296556
RefSeq - NM_200835
RefSeq Peptide - NP_957129
swissprot - X1WH62
swissprot - X1WF78
ZFIN ID - ZDB-GENE-040426-1756
Ensembl - ENSDARG00000039521
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SSX2IPENSGALG00000008763Gallus gallus
 Q9Y2D8ENSG00000117155Homo sapiens
 Q8VC66ENSMUSG00000036825Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ssx2ipb / synovial sarcoma, X breakpoint 2 interacting protein b / Q9Y2D8* / SSX2IP* / Q8VC66* / SSX family member 2 interacting protein* / synovial sarcoma, X 2 interacting protein*ENSDARG0000006160246
si:ch211-286b5.4ENSDARG000000897653


Protein motifs (from Interpro)
Interpro ID Name
 IPR021622  Afadin/alpha-actinin-binding


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007368 determination of left/right symmetry IMP
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0036064 ciliary basal body IDA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle motile cilium decreased length , abnormal
Kupffers vesicle motile cilium decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
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contact: otassy@igbmc.fr