ENSDARG00000039958


Danio rerio

Features
Gene ID: ENSDARG00000039958
  
Biological name :utp11l
  
Synonyms : utp11l / UTP11-like, U3 small nucleolar ribonucleoprotein (yeast)
  
Possible biological names infered from orthology : Q9CZJ1 / Q9Y3A2 / UTP11 / UTP11, small subunit processome component
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 33645721
Gene end: 33650578
  
Corresponding Affymetrix probe sets: Dr.7852.1.S1_at (Zebrafish Array)   NM_199998_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000058459
NCBI entrez gene - 336149     See in Manteia.
RefSeq - NM_199998
RefSeq Peptide - NP_956292
swissprot - A2BGW6
ZFIN ID - ZDB-GENE-030131-8093
Ensembl - ENSDARG00000039958
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UTP11ENSGALG00000001502Gallus gallus
 UTP11ENSG00000183520Homo sapiens
 Utp11ENSMUSG00000028907Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007144  Small-subunit processome, Utp11


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006364 rRNA processing IBA
 biological_processGO:0042274 ribosomal small subunit biogenesis IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0032040 small-subunit processome IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain quality , abnormal
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 ZFA:0000029 hindbrain hindbrain anterior/posterior pattern specification disrupted , abnormal
hindbrain axon mislocalised , abnormal
hindbrain glial cell (sensu Vertebrata) mislocalised , abnormal
hindbrain radial glial cell morphology , abnormal
hindbrain quality , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary quality , abnormal
midbrain hindbrain boundary decreased thickness , abnormal
midbrain hindbrain boundary condensed , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000059 postoptic commissure postoptic commissure has fewer parts of type astrocyte , abnormal
postoptic commissure commissural neuron axon guidance disrupted , abnormal
postoptic commissure astrocyte mislocalised , abnormal
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 ZFA:0000075 spinal cord spinal cord lacks all parts of type ventricular zone radial glial cell, abnormal
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 ZFA:0000084 yolk yolk quality , abnormal
yolk circular , abnormal
yolk grey , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000109 forebrain forebrain commissural neuron axon guidance disrupted , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
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 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
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 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0000435 cranial nerve II cranial nerve II absent , abnormal
cranial nerve II decreased size , abnormal
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 ZFA:0001094 whole organism whole organism shape , abnormal
whole organism viability , abnormal
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 ZFA:0001108 anterior commissure anterior commissure decreased size , abnormal
anterior commissure has fewer parts of type astrocyte , abnormal
anterior commissure commissural neuron axon guidance disrupted , abnormal
anterior commissure astrocyte mislocalised , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk decreased length , abnormal
trunk decreased size , abnormal
trunk decreased thickness , abnormal
trunk bent , abnormal
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 ZFA:0001439 anatomical system anatomical system quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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