ENSDARG00000040443


Danio rerio

Features
Gene ID: ENSDARG00000040443
  
Biological name :polr2i
  
Synonyms : polr2i / polymerase (RNA) II (DNA directed) polypeptide I
  
Possible biological names infered from orthology : DNA-directed RNA polymerase II subunit RPB9 / P36954 / P60898 / RNA polymerase II subunit I
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 40909821
Gene end: 40913301
  
Corresponding Affymetrix probe sets: Dr.21233.1.S1_at (Zebrafish Array)   NM_001006013_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000059195
Ensembl peptide - ENSDARP00000089648
NCBI entrez gene - 449992     See in Manteia.
RefSeq - NM_001006013
RefSeq Peptide - NP_001006013
swissprot - Q1LVK1
swissprot - Q1LVK2
ZFIN ID - ZDB-GENE-041010-106
Ensembl - ENSDARG00000040443
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 P36954ENSG00000105258Homo sapiens
 P60898ENSMUSG00000019738Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001222  Zinc finger, TFIIS-type
 IPR001529  DNA-directed RNA polymerase, M/15kDa subunit
 IPR012164  DNA-directed RNA polymerase subunit/transcription factor S
 IPR019761  DNA-directed RNA polymerase M, 15kDa subunit, conserved site
 IPR034012  Pol II subunit B9, C-terminal zinc ribbon


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001193 maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter IBA
 biological_processGO:0006283 transcription-coupled nucleotide-excision repair IBA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IBA
 biological_processGO:0006379 mRNA cleavage IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005665 DNA-directed RNA polymerase II, core complex IBA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Transcriptional regulation by small RNAs
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
FGFR2 alternative splicing
RNA polymerase II transcribes snRNA genes
mRNA Capping
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Processing of Capped Intron-Containing Pre-mRNA
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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